SIMAP and HMMER applications

SIMAP and HMMER applications

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Software status
PCs with SSE support (all modern PCs and notebooks):
 simap 5.10 for Windows stable
 simap 5.12 for Windows64 stable
 simap 5.11 for Linux stable
 hmmer 5.09 for Windows stable
 hmmer 5.09 for Linux stable
PowerPC/Intel based Apple computers (Mac's):
 simap 5.10 for MacOS >=10.3.9 stable
 hmmer 5.09 for MacOS >=10.3.9 stable
PCs without SSE (e.g. PII, K6, early Athlons):
 i386-simap** 5.10 for Windows stable
 i386-simap** 5.11 for Linux stable
PC/PARISC/IA64/Alpha/Sparc platforms for UNIX:
 UNIX simap** 5.10 stable
 UNIX hmmer** 5.09 stable

** These applications need manual installation (see below).

Looking for i386 hmmer apps for Windows and Linux? These builds are no longer needed for hmmer. Just let your boinc client download the default windows or linux application automatically.
However, if you are using a recent version of Boinc and the app_info.xml for anonymous-platform executables (as available below) you will still need to get the windows/linux i686-hmmer executable manually. See the links below to find it listed.

SIMAP and HMMER applications for manual installation on special CPUs and platforms:

Application Signatures CPU specification Operating system
simap_5.10_i386_windows_x86.exe Signature PC/Intel compatible CPUs without SSE Microsoft Windows
simap_5.11_i386-pc-linux-gnu Signature PC/Intel compatible CPUs without SSE Linux
simap_5.11_i686-pc-linux-gnu Signature AMD Opteron CPUs that run Linux kernels < 2.6.9 should use this default i686 binary x86 and x86_64 Linux
simap_5.10_i386-pc-freebsd Signature PC/Intel compatible CPUs without SSE FreeBSD
simap_5.10_i686-pc-freebsd Signature PC/Intel compatible CPUs with SSE FreeBSD
simap_5.10_i386-pc-netbsd Signature PC/Intel compatible CPUs NetBSD
simap_5.10_i686-pc-netbsd Signature PC/Intel compatible CPUs with SSE NetBSD
simap_5.10_i386-pc-solaris Signature PC/Intel compatible CPUs without SSE Solaris
simap_5.10_i686-pc-solaris Signature PC/Intel compatible CPUs with SSE Solaris
simap_5.10_i386-pc-openbsd Signature PC/Intel compatible CPUs OpenBSD
simap_5.10_ia64-unknown-linux Signature IA64 Linux
simap_5.10_powerpc-unknown-linux.gz Signature PowerPC/PPC/PS3 Linux
simap_5.10_power-ibm-aix.tar.gz Signature PowerPC/PPC AIX
simap_5.10_ia64-hp-hpux11i.tar Signature IA64 HPUX
simap_5.10_hppa1.1-hp-linux.tar.gz Signature PARISC 32 bit Linux
simap_5.10_hppa1.1-hp-hpux1020 Signature PARISC 32 bit HPUX 10.20 or later
simap_5.10_hppa2.0-hp-hpux11i Signature PARISC 64 bit HPUX 11i or later
simap_5.08_alpha_ev4-hp-tru64 Signature Alpha EV4 True64
simap_5.08_alpha_ev6-hp-tru64 Signature Alpha EV6 True64
simap_5.10_alpha_ev4-hp-linux Signature Alpha EV4..EV7 Linux
simap_5.10_sparc-v8-sun-solaris Signature SUN Sparc 32 bit Solaris v8 (HyperSPARC/SuperSPARC) or later
simap_5.10_mips-sgi-irix.tar.gz Signature MIPS3 architecture (>=R4000 CPUs) Irix >= 6.5.22
simap_5.10_ultrasparc-sun-linux Signature SUN UltraSparc Linux
simap_5.10_ultrasparc-sun-solaris Signature SUN UltraSparc Solaris
simap_5.10_sparc64-sun-openbsd.gz Signature SUN Sparc64 OpenBSD
simap_5.10_amd64-pc-freebsd.gz Signature PC/AMD64 compatible 64bit CPUs FreeBSD 7.x x64 (on 8.x x64 install compat7x-amd64 package)
Application Signatures CPU specification Operating system
hmmer_5.09_hppa1.1-hp-hpux110.tar.gz Signature PARISC 32 bit HPUX 11 or later
hmmer_5.09_hppa2.0-hp-hpux11i.tar.gz Signature PARISC 64 bit HPUX 11i or later
hmmer_5.09_i386-pc-freebsd.tar.gz Signature PC/Intel compatible CPUs without SSE FreeBSD
hmmer_5.09_i686-pc-freebsd.tar.gz Signature PC/Intel compatible CPUs with SSE FreeBSD
hmmer_5.09_i686-pc-solaris.tar.gz Signature PC/Intel compatible CPUs with SSE Solaris
hmmer_5.09_i386-pc-solaris.tar.gz Signature PC/Intel compatible CPUs without SSE Solaris
hmmer_5.09_ia64-hp-hpux11i.tar.gz Signature IA64 HPUX
hmmer_5.09_ia64-unknown-linux.tar.gz Signature IA64 Linux
hmmer_5.09_powerpc-unknown-linux.gz Signature PowerPC/PPC/PS3 Linux
hmmer_5.09_sparcv8-sun-solaris.tar.gz Signature SUN Sparc 32 bit Solaris v8 (HyperSPARC/SuperSPARC) or later
hmmer_5.09_ultrasparc-sun-linux.tar.gz Signature SUN UltraSparc Linux
hmmer_5.09_ultrasparc-sun-solaris.tar.gz Signature SUN UltraSparc Solaris
hmmer_5.09_hppa1.1-hp-linux.tar.gz Signature PARISC 32 bit Linux
hmmer_5.09_i686-pc-linux-gnu Signature PC/Intel compatible CPUs without SSE Linux
hmmer_5.09_windows_intelx86.exe Signature PC/Intel compatible CPUs without SSE Microsoft Windows

Using the crypt_prog application from BOINC the public key below can be used to verify the downloads:

1024
d087de98b9fac3b729aa258a7e6502ff4511c4f889781e88f15c6b84f66ea098
aea311fd721ad033ede056a8160ff430a362e1ea3040dc70d20a336449d41154
355261e47f0827e29e1113593e5af282d415fb6604324640ec29912321a866c5
0c3667cb9424be152e3690499e0d91e1b1813346a0d7e96bcb91fb73bbd65e41
0000000000000000000000000000000000000000000000000000000000000000
0000000000000000000000000000000000000000000000000000000000000000
0000000000000000000000000000000000000000000000000000000000000000
0000000000000000000000000000000000000000000000000000000000010001
.

Special thanks to Lars Bausch for porting the code and compiling the applications for these platforms.

All manually downloaded applications should use the "Anonymous" platform of boinc (Why? See the ). Create the app_info.xml as described in the .
Here is a sample app_info.xml file for Windows on i386 CPUs:

 <app_info>
     <app>
         <name>simap</name>
     </app>
     <file_info>
         <name>simap_5.10_i386_windows_x86.exe</name>
     </file_info>
     <app_version>
         <app_name>simap</app_name>
         <version_num>510</version_num>
         <file_ref>
             <file_name>simap_5.10_i386_windows_x86.exe</file_name>
             <main_program/>
         </file_ref>
     </app_version>
     <app>
         <name>hmmer</name>
     </app>
     <file_info>
         <name>hmmer_5.09_windows_intelx86.exe</name>
     </file_info>
     <app_version>
         <app_name>hmmer</app_name>
         <version_num>509</version_num>
         <file_ref>
             <file_name>hmmer_5.09_windows_intelx86.exe</file_name>
             <main_program/>
         </file_ref>
     </app_version>
 </app_info>

Due to a bug (-attach_project deletes the contents of projects/$PROJECTNAME) in the boinc core clients from version 4.5 to 5.2 you should upgrade your boinc client to version 5.4.9 or later or use an alternative boinc attachment procedure.



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